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Computer vision

Segmentation

  • Morphological snakes for image segmentation and tracking

Statistical models

Classification

  • Sparse sensor placement optimization for classification
  • Neural decoding from Kording Lab

    Dimensionality reduction

  • seqNMF: Mackevicius et al., eLife, 2018
  • Dynamic Mode Decomposition

    State space model

  • Structured Inference Networks for Nonlinear State Space Models
  • Bayesian learning and inference for state space models: Linderman et al., AISTATS, 2017

    GLM

  • Tools for spike data analysis and visualization

    Spike detection

  • A class for using ML algorithms for spike prediction

    Tutorials

  • SKLearn

Fish data processing

  • WebGL-based viewer for volumetric data
  • Davis’ notebook on zebrafish data analyses: credited to Davis V Bennett
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