Computer vision

Segmentation

• Morphological snakes for image segmentation and tracking

Statistical models

Classification

• Sparse sensor placement optimization for classification
• Neural decoding from Kording Lab

  Dimensionality reduction

• seqNMF: Mackevicius et al., eLife, 2018
• Dynamic Mode Decomposition

  State space model

• Structured Inference Networks for Nonlinear State Space Models
• Bayesian learning and inference for state space models: Linderman et al., AISTATS, 2017

  GLM

• Tools for spike data analysis and visualization

  Spike detection

• A class for using ML algorithms for spike prediction

  Tutorials

• SKLearn

Fish data processing

• WebGL-based viewer for volumetric data
• Davis’ notebook on zebrafish data analyses: credited to Davis V Bennett