Table of Contents
The table of contents of this git repos
Computational neuroscience
Models
- Multi-item working memory network: Recurrent neural networks for multi-item working memory and its capacity in a delayed-response task (Wei et al., J. Neurosci., 2012)
- Integral-and-fire model of mouse V1-layer 4: Integral-and-fire version of biophysical model simulation for neurons in Layer IV of Area V1 in mice (Arkhipov et al., 2018)
- Ramp cell model: [Video talk]
Lectures
- Computational neuroscience tutorial: Partially as the materials for tutorial lecture in Summer Graduate School on Mathematical Analysis of Behavior (2018, JRC)
- Classical analyses for ephys data: Bootcamp material for JHU-JRC Neuroscience program 2017
- Classical analyses for imaging data: Bootcamp material for JHU-JRC Neuroscience program 2018
Statistical neuroscience
Ephys
- ALM data analyses: see detail in paper Wei et al. (2018)
Imaging
- Voltron imaging: compiled pipeline for voltron imaging processing (specifically written for zebrafish data)
Calcium imaging
- Calcium to spike deconvolution algorithms
- Calcium imaging vs ephys (website)
- Calcium imaging vs ephys (paper)
Oscillatory acitivity
- Lim J.X.’s project
Projects
Behavior
Large-scale neural data analysis
- Epoch Dependent LDS Fit: Wei et al. (2018)
- Supervind: (contributed) credited to Daniel Hernandez Diaz
- SLDS: (contributed) credited to Matthew Johnson and Scott Linderman