Ziqiang Wei

Sensorimotor processing in the zebrafish dorsal raphe nucleus. (in preparation)

Hernandez, D., Moretti, A. K., Saxena, S., Wei, Z., Cunningham, J., & Paninski, L. (2020). Nonlinear evolution via spatially-dependent linear dynamics for electrophysiology and calcium data. NBDT 1(7).

Wan, Y., Wei, Z., Looger, L.L., Koyama, M. et al. (2019). Single-cell reconstruction of emerging population activity in an entire developing circuit. Cell 179(2). [Git] [Preview] [Nature news & views] [News]

Wei, Z., Inagaki, H., Li, N., Svoboda, K., & Druckmann, S. (2019). An orderly single-trial organization of population dynamics in premotor cortex predicts behavioral variability. Nature Communications 10(216). [Git] [Early version]

Hernandez, D., Moretti, A. K., Wei, Z., Saxena, S., Cunningham, J., & Paninski, L. (2018). A novel variational family for hidden nonlinear Markov models. arXiv:1811.02459.

Yang, E., Zwart, M.F., James, B., Rubinov, M., Wei, Z., & et al. (2022). A brainstem integrator for self-location memory and positional homeostasis in zebrafish. Cell, 185(26), 5011-5027. [Talk] [Early version]

Arkhipov, A., Gouwens, N. W., Billeh, Y. N., Gratiy, S., Iyer, R., Wei, Z., & et al. (2018). Visual physiology of the layer 4 cortical circuit in silico. PLOS Computational Biology 14(11): e1006535. [Git#1] [Git#2]

Wei, Z., & Wang, X. J. (2015). Confidence estimation as a stochastic process in a neurodynamical system of decision making. Journal of neurophysiology, 114(1), 99-113. [Git]

Wei, Z., Wang, X. J., & Wang, D. H. (2012). From distributed resources to limited slots in multiple-item working memory: a spiking network model with normalization. Journal of Neuroscience, 32(33), 11228-11240. [Git] [Journal club]

Zhang, Y., Rózsa, M., Liang, Y., Bushey, D., Wei, Z., & et al. (2023). Fast and sensitive GCaMP calcium indicators for imaging neural populations. Nature. [Early version] [NEWS & VIEWS FORUM] [Git]

Wei, Z., Lin, B. J., Chen, T. W., Daie, K., Svoboda, K., & Druckmann, S. (2020). A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology. PLOS Computational Biology, 16(9), e1008198. [Early version] [Website] [Git#1] [Git#2] [Git-API] [Git-Website]

Wei, Z., Hong, Y., & Wang, D. (2009). The phase diagram and the pathway of phase transitions for traffic flow in a circular one-lane roadway. Physica A: Statistical Mechanics and its Applications, 388(8), 1665-1672.

Dahui, W., Ziqiang, W., & Ying, F. (2007). Hysteresis phenomena of the intelligent driver model for traffic flow. Physical review E, 76(1), 016105.

July 13-31, 2020: Neuromatch Academy (NMA) Summer School, Lead TA git repo

August 27-28, 2019: JHU Neuroscience bootcamp git repo

August 4-6, 2018: JHU Neuroscience bootcamp git repo

August 4-6, 2017: JHU Neuroscience bootcamp git repo

June 17 - 30, 2018: Summer Graduate School on Mathematical Analysis of Behavior (Janelia Research Campus) git repo

Chinese Systems and Computational Neural group

Ephys-ophys: http://im-phys.org/

Git TOC

Collection of other github repos

Wei, Z., Lin, BJ., Chen, TW., Daie, K., Svoboda, K., Druckmann, S. (2020): Raw data for "A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology"`. figshare. Dataset. https://doi.org/10.6084/m9.figshare.12792587

Wei, Z., Lin, BJ., Chen, TW., Daie, K., Svoboda, K., Druckmann, S. (2020): Precompiled data for "A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology". figshare. Dataset. https://doi.org/10.6084/m9.figshare.12786296.v1

http://im-phys.org/data

Wei, Z., Inagaki, H., Li, N., Svoboda, K., & Druckmann, S. (2018). Simultaneous extracellular electrophysiology data. [DOI: 10.6084/m9.figshare.7372898]

Calcium to spike model comparison

Epoch-Dependent Linear Dynamical Systems [DOI:10.5281/zenodo.1403158]